Long-term monitoring of Ziphius cavirostris behavior using 3D tracking from fixed hydrophone arrays off Southern California. Baggett, Lauren M., Eric R. Snyder, Alba Solsona-Berga, Isabelle J. Curran, Sean M. Wiggins, John A. Hildebrand, Ana Širović, Kaitlin E. Frasier, Simone Baumann-Pickering . Scientific Reports. 2025. 15: 40859 (2025)
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Date Published:
  • November 19, 2025
Publication:Ocean:Region:Species:Methods:
Vessel strike encounter risk model informs mortality risk for endangered North Atlantic right whales along the United States east coast. Blondin, Hannah; Garrison, Lance P.; Adams, Jeffrey D.; Roberts, Jason J.; Good, Caroline P.; Gahm, Meghan P.; Lisi, Niki E.; Patterson, Eric M.. Scientific Reports. 2025. 736 (2025). https://doi.org/10.1038/s41598-024-84886-z
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Date Published:
  • January 3, 2025
Publication:Ocean:Region:Species:Methods:
Long-term passive acoustic recordings track the changing distribution of North Atlantic right whales (Eubalaena glacialis) from 2004 to 2014. Davis, G. E., M.F. Baumgartner, J.M. Bonnell, J. Bell, C. Berchok, J. Bort Thornton, S. Brault, G. Buchanan, R.A. Charif, D. Cholewiak, C.W. Clark, P. Corkeron, J. Delarue, K. Dudzinski, L. Hatch, J. Hildebrand, L. Hodge, H. Klinck, S. Kraus, B. Martin, D.K. Mellinger, H. Moors-Murphy, S. Nieukirk, D.P. Nowacek, S. Parks, A.J. Read, A.N. Rice, D. Risch, A. Širović, M. Soldevilla, K. Stafford, J.E. Stanistreet, E. Summers, S. Todd, A. Warde, and S.M. Van Parijs. Scientific Reports. 2017. 7:13460
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Date Published:
  • October 18, 2017
Publication:Ocean:Region:Species:Methods:
The MAMBAT framework for acoustic tracking of multiple animals. Gruden, P., E-M. Nosal, and E.E. Henderson. Scientific Reports. 2025. 15:16505
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Date Published:
  • May 13, 2025

Passive acoustic monitoring (PAM) is a key technology for studying marine mammal populations. PAM typically generates large volumes of data that contain signals from multiple overlapping sources. To extract meaningful information from these data, automated tools are required that can cope with multiple sources, missed detections, and false alarms. This paper presents the Multiple-Animal Model-Based Acoustic Tracking (MAMBAT) framework, which integrates model-based localization with Bayesian multi-target tracking to automatically track multiple sound sources using acoustic data from wide baseline arrays. MAMBAT leverages a “Track-before-Localize” strategy followed by a “Localize-then-Track” strategy that does not require detection, classification, or association steps. The framework’s effectiveness is demonstrated through application to real-world datasets that contain multiple sperm whales from two ocean basins. MAMBAT advances our ability to monitor marine mammal distribution, abundance, and behavior, with potential to provide valuable information for conservation and management efforts.

Publication:Ocean:Region:Methods:
Hidden Markov models reveal complexity in the diving behaviour of short-finned pilot whales. Quick, N.J., S. Isojunno, D. Sadykova, M. Bowers, D.P. Nowacek, and A.J. Read.. Scientific Reports. 2017. 7:45765
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Date Published:
  • March 31, 2017

Diving behaviour of short-finned pilot whales is often described by two states; deep foraging and shallow, non-foraging dives. However, this simple classification system ignores much of the variation that occurs during subsurface periods. We used multi-state hidden Markov models (HMM) to characterize states of diving behaviour and the transitions between states in short-finned pilot whales. We used three parameters (number of buzzes, maximum dive depth and duration) measured in 259 dives by digital acoustic recording tags (DTAGs) deployed on 20 individual whales off Cape Hatteras, North Carolina, USA. The HMM identified a four-state model as the best descriptor of diving behaviour. The state-dependent distributions for the diving parameters showed variation between states, indicative of different diving behaviours. Transition probabilities were considerably higher for state persistence than state switching, indicating that dive types occurred in bouts. Our results indicate that subsurface behaviour in short-finned pilot whales is more complex than a simple dichotomy of deep and shallow diving states, and labelling all subsurface behaviour as deep dives or shallow dives discounts a significant amount of important variation. We discuss potential drivers of these patterns, including variation in foraging success, prey availability and selection, bathymetry, physiological constraints and socially mediated behaviour.

Publication:Ocean:Region:Species:Methods:
Complete
Assessment of Marine Mammal Vocal Response to Sonar
Project Objectives
Develop analytic methods to evaluate the vocal response of odontocetes and mysticetes to sonar from navy training activities
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Current
Estimation of Received Levels of MFAS and Behavioral Response of Marine Mammals at PMRF
Project Objectives
Further our understanding of the Monitoring Questions: 1) What is the occurrence and estimated received levels of MFAS on 'blackfish', humpback, minke, sperm and Blainville's beaked whales within the PMRF instrumented range? and 2) What, if any, are the short term behavioral responses of 'blackfish,' humpback, minke, sperm and Blainville's beaked whales when exposed to MFAS/explosions at different levels/conditions at PMRF?
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Current
Gulf of Alaska Acoustic Moorings and Analysis
Project Objectives
Conduct systematic line transect survey for marine mammals for density estimates; conduct survey to determine ecotype identity of killer whales; analyze existing and newly collected data for seasonal occurrence, abundance, and density of cetacean
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Current
Long Term Acoustic Monitoring of Marine Mammals Utilizing the Instrumented Range at Pacific Missile Range Facility (PMRF)
Project Objectives
Improve understanding of the long term trends in occurrence of marine mammals (e.g., minke, humpback, fin, Bryde's, Blainville's) on the PMRF range. Examine what, if any, acoustic and physical behavioral responses occur to Navy activities.
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Complete
Mariana Islands Sea Turtle and Cetacean Survey (MISTICS)
Project Objectives
Determine what species of marine mammals and sea turtles are present and estimate abundance.
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Current
Mid-Atlantic Offshore Cetacean Study
Project Objectives
Assess occurrence, habitat use, and baseline behavior of cetaceans in the offshore and continental shelf break region of the VACAPES OPAREA
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Current
Pacific Islands Comprehensive Stranding Investigations
Project Objectives
Conduct comprehensive investigations of stranded marine mammals throughout the Pacific Islands with emphasis on the Hawaiian and Mariana Island chains. This includes conducting necropsies of stranded animals, collecting and archiving samples, conducting disease screening, genetic testing, and analysis of historical data. The objective is to examine stranding patterns and causes of death for marine mammals in the Pacific Islands.
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Current
Pacific Marine Assessment Program for Protected Species (PACMAPPS) survey
Project Objectives
Identify species of beaked whales, odontocetes, and baleen whales that occur in the surveyed areas; Monitor marine mammal and sea turtle presence, distribution, and diversity in offshore waters; Develop a better understanding of marine mammal distribution, movement patterns, habitat use, population structure, and abundance; Develop reference library of visually-validated acoustic recordings of marine mammals.
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Complete
Passive Acoustic Monitoring of Marine Mammals Using Gliders in Marianas
Project Objectives
Identify acoustically distinct species of beaked whales, odontocetes, and baleen whales that occur in the Mariana Islands; develop a better understanding of marine mammal distribution, habitat use, and abundance
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Complete
Small vessel visual surveys in the Mariana Islands Range Complex
Project Objectives
Identify species of beaked whales, odontocetes, and baleen whales that occur in the Mariana Islands; Monitor marine mammal and sea turtle presence, distribution, and diversity in nearshore waters during key seasons (summer and winter); Develop a better understanding of marine mammal distribution, movement patterns, habitat use, population structure, and abundance; Develop reference library of visually-validated acoustic recordings of marine mammals.
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Current
Visual Survey and Tagging of Hawaiian Odontocetes
Project Objectives
(1) define the spatial movement and habitat use patterns of species that are exposed to mid-frequency active (MFA) sonar (2) determine how these patterns influence exposure and potential responses
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A Macrocephalus Mother's Day Tradition
May 27, 2026
HDR-lead team encountered a group of mainly female sperm whales with calves on Mother's Day for the 2nd year in a row, and successfully deployed a tag from a drone. We believe it's the first CATS tag deployed on a sperm whale via drone.
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Atlantic BRS - field work update
July 16, 2025
You never know what you will see offshore, and this weekend was no exception.
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2024-2025 Large Whale Season Summary
March 24, 2025
We have two separate efforts focusing on cetaceans off the coast of Virginia. The first is our Offshore (Outer Continental Shelf) Cetacean Study, which focuses primarily on deep diving odontocetes like sperm whales. The second effort is our Nearshore and Mid-Shelf Baleen Whale Monitoring Project.
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Sperm whales tagged off Virginia Beach
August 25, 2017
Several groups of sperm whales were sighted offshore of VA.
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