Long-term monitoring of Ziphius cavirostris behavior using 3D tracking from fixed hydrophone arrays off Southern California. Baggett, Lauren M., Eric R. Snyder, Alba Solsona-Berga, Isabelle J. Curran, Sean M. Wiggins, John A. Hildebrand, Ana Širović, Kaitlin E. Frasier, Simone Baumann-Pickering . Scientific Reports. 2025. 15: 40859 (2025)
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Date Published:
  • November 19, 2025
Publication:Ocean:Region:Species:Methods:
Vessel strike encounter risk model informs mortality risk for endangered North Atlantic right whales along the United States east coast. Blondin, Hannah; Garrison, Lance P.; Adams, Jeffrey D.; Roberts, Jason J.; Good, Caroline P.; Gahm, Meghan P.; Lisi, Niki E.; Patterson, Eric M.. Scientific Reports. 2025. 736 (2025). https://doi.org/10.1038/s41598-024-84886-z
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Date Published:
  • January 3, 2025
Publication:Ocean:Region:Species:Methods:
Long-term passive acoustic recordings track the changing distribution of North Atlantic right whales (Eubalaena glacialis) from 2004 to 2014. Davis, G. E., M.F. Baumgartner, J.M. Bonnell, J. Bell, C. Berchok, J. Bort Thornton, S. Brault, G. Buchanan, R.A. Charif, D. Cholewiak, C.W. Clark, P. Corkeron, J. Delarue, K. Dudzinski, L. Hatch, J. Hildebrand, L. Hodge, H. Klinck, S. Kraus, B. Martin, D.K. Mellinger, H. Moors-Murphy, S. Nieukirk, D.P. Nowacek, S. Parks, A.J. Read, A.N. Rice, D. Risch, A. Širović, M. Soldevilla, K. Stafford, J.E. Stanistreet, E. Summers, S. Todd, A. Warde, and S.M. Van Parijs. Scientific Reports. 2017. 7:13460
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Date Published:
  • October 18, 2017
Publication:Ocean:Region:Species:Methods:
The MAMBAT framework for acoustic tracking of multiple animals. Gruden, P., E-M. Nosal, and E.E. Henderson. Scientific Reports. 2025. 15:16505
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Date Published:
  • May 13, 2025

Passive acoustic monitoring (PAM) is a key technology for studying marine mammal populations. PAM typically generates large volumes of data that contain signals from multiple overlapping sources. To extract meaningful information from these data, automated tools are required that can cope with multiple sources, missed detections, and false alarms. This paper presents the Multiple-Animal Model-Based Acoustic Tracking (MAMBAT) framework, which integrates model-based localization with Bayesian multi-target tracking to automatically track multiple sound sources using acoustic data from wide baseline arrays. MAMBAT leverages a “Track-before-Localize” strategy followed by a “Localize-then-Track” strategy that does not require detection, classification, or association steps. The framework’s effectiveness is demonstrated through application to real-world datasets that contain multiple sperm whales from two ocean basins. MAMBAT advances our ability to monitor marine mammal distribution, abundance, and behavior, with potential to provide valuable information for conservation and management efforts.

Publication:Ocean:Region:Methods:
Hidden Markov models reveal complexity in the diving behaviour of short-finned pilot whales. Quick, N.J., S. Isojunno, D. Sadykova, M. Bowers, D.P. Nowacek, and A.J. Read.. Scientific Reports. 2017. 7:45765
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Date Published:
  • March 31, 2017

Diving behaviour of short-finned pilot whales is often described by two states; deep foraging and shallow, non-foraging dives. However, this simple classification system ignores much of the variation that occurs during subsurface periods. We used multi-state hidden Markov models (HMM) to characterize states of diving behaviour and the transitions between states in short-finned pilot whales. We used three parameters (number of buzzes, maximum dive depth and duration) measured in 259 dives by digital acoustic recording tags (DTAGs) deployed on 20 individual whales off Cape Hatteras, North Carolina, USA. The HMM identified a four-state model as the best descriptor of diving behaviour. The state-dependent distributions for the diving parameters showed variation between states, indicative of different diving behaviours. Transition probabilities were considerably higher for state persistence than state switching, indicating that dive types occurred in bouts. Our results indicate that subsurface behaviour in short-finned pilot whales is more complex than a simple dichotomy of deep and shallow diving states, and labelling all subsurface behaviour as deep dives or shallow dives discounts a significant amount of important variation. We discuss potential drivers of these patterns, including variation in foraging success, prey availability and selection, bathymetry, physiological constraints and socially mediated behaviour.

Publication:Ocean:Region:Species:Methods:
Complete
Acoustic and Visual Survey for Cetaceans in Behm Canal and Southern Clarence Strait, Alaska
Project Objectives
Conduct visual line-transect surveys and passive acoustic monitoring for cetaceans, and other marine mammals, to determine species occurrence, and to estimate density within Navy’s testing range. Acoustic monitoring devices will be deployed during the vessel based survey, and long-term passive acoustic hydrophones will be monitored for year-round detection of rare and/or cryptic cetacean species.
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Acoustic Tagging of Green Sturgeon to Evaluate Habitat Use Along the Washington Coast
Project Objectives
With acoustic telemetry, determine 1) the location of green sturgeon detections within Washington, 2) the season for specific habitat use (e.g., estuaries; coastal waters), 3) the frequency an animal moves between coastal and estuarine waters, and 4) the range of each tagged animal.
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Complete
Aerial Surveys of Marine Mammals Conducted in the Inland Puget Sound Waters of Washington, summer 2013 – winter 2016
Project Objectives
1) Conduct aerial surveys during four seasonal periods within the inland Puget Sound Survey Area to assess potential differences in seasonal distribution, numbers, and behavioral state patterns of marine mammals; 2) Collect data to estimate densities of marine mammals in the inland Puget Sound waters for species with sufficient sightings; 3) Estimate abundance for each marine mammal species seen an adequate number of times; 4) Document the distribution and habitat use of each species observed; 5) Document and describe behaviors seen without performing focal follows.
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Complete
Characterizing the Distribution of ESA-listed Salmonids in Washington and Alaska
Project Objectives
Use acoustic tagging technology to provide critical information on spatial and temporal distribution of salmonids to inform salmon management, U.S. Navy activity, and Southern Resident Killer Whale (SRKW) conservation. The study seeks to 1) determine the occurrence and timing of salmonids within the Navy training ranges, 2) describe the influence of environmental covariates on salmonid occurrence; and, 3) describe the occurrence of salmonids in relation to SRKW distribution.
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Complete
Guadalupe Fur Seal Satellite Tracking
Project Objectives
Determine the at-sea distribution of endangered Guadalupe fur seals and whether they travel through or utilize the offshore waters of the Southern California Range Complex and Northwest Training and Testing area
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Current
Monitoring Cetaceans in Hood Canal
Project Objectives
This 12‑month integrated pilot project combines three complementary components: (A) shore‑based theodolite monitoring of harbor porpoises, (B) high‑bandwidth passive acoustic monitoring and soundscape characterization, and (C) suction‑cup multi‑sensor tag deployments on Bigg’s (transient) killer whales. Together, these data streams will quantify occurrence, movement, diving, and behavioral context for these two key species in relation to the local soundscape—including operational signals near the Dabob Bay Range Complex (DBRC) and the Bangor Trident Base. Results can provide an empirical foundation and inform the study design of future cetacean behavioral response studies (BRS) in Hood Canal.
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Complete
North Pacific Humpback Whale Tagging
Project Objectives
Determine the occurrence, movement patterns, and residency patterns of multiple humpback whale Distinct Population Segments within Pacific Ocean Navy Range Complexes
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Current
North Pacific Marine Mammal Species Distribution
Project Objectives
Develop a North Pacific-wide species distribution model for cetaceans
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Complete
Occurrence of Green Sturgeon in Inland Waters (historical tag analysis)
Project Objectives
Compile green sturgeon tag and receiver data and analyze historical data for occurrence, distribution, and seasonality in Puget Sound and the Straits of Juan de Fuca
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Complete
Offshore Distribution of Southern Resident Killer Whales in the Pacific Northwest
Project Objectives
1) Identify and classify Southern Resident killer whale (SRKW) detections from acoustic recorders and satellite tag tracking; 2) Develop a model to estimate the seasonal and annual occurrence patterns of southern resident killer whales relative to offshore Navy training ranges. 3) Characterize occurrence of anthropogenic sounds in potential SRKW habitat. 4) Develop state space habitat model for SRKW prey, based on fall Chinook salmon tagged released from California to British Columbia between 1977 and 1990 to estimate seasonal distribution along the west coast.
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Current
Pacific Marine Assessment Program for Protected Species (PACMAPPS) survey
Project Objectives
Identify species of beaked whales, odontocetes, and baleen whales that occur in the surveyed areas; Monitor marine mammal and sea turtle presence, distribution, and diversity in offshore waters; Develop a better understanding of marine mammal distribution, movement patterns, habitat use, population structure, and abundance; Develop reference library of visually-validated acoustic recordings of marine mammals.
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Current
Passive Acoustic Monitoring of Harbor Porpoises in Hood Canal
Project Objectives
This project was jointly funded through NAVSEA and the NUWC Keyport NISE program to address the Navy’s need for multi-year data on harbor porpoise occurrence and spatiotemporal distribution patterns in Hood Canal using passive acoustic monitoring (PAM).
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Current
Salmonid and Southern Resident Killer Whale Distribution in the Pacific Northwest
Project Objectives
1) Determine the occurrence of bull trout within and near the boundaries of the NWTT; 2) Determine the spatiotemporal occurrence of killer whale and baleen whale in the NWTT; 3) Characterize the occurrence of endangered fish species within the NWTT
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Complete
Satellite Tagging and Behavioral Monitoring of Male California Sea Lions in the Pacific Northwest to Assess Haul-out Behavior on Puget Sound Navy Facilities and Foraging Behavior in Marine Navy Testing and Training Areas
Project Objectives
To determine the abundance and habitat use of California sea lions that haul out at Navy facilities and forage in testing and training areas
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Complete
Vessel-based Marine Mammal Surveys in Puget Sound, Washington
Project Objectives
Conduct marine mammal in-water vessel-based line transect surveys in the Puget Sound basin to: 1) Record data on all marine mammal species seen with the study area, with a focus on the killer whale (Orcinus orca) and the harbor porpoise (Phocoena phocoena). 2) Identify the seasonal occurrence and abundance/density of cetaceans within the study area. 3) Identify the effects of environmental variables on the distribution and abundance of species in the study area.
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